Hugging Peers

John E. Stone

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21 papers 2001–2022

GPU clusters for high-performance computing

Volodymyr V. Kindratenko, Jeremy Enos, Guochun Shi, Michael T. Showerman, Galen Wesley Arnold, John E. Stone
+2 more show fewer
James C. Phillips, Wen-mei W. Hwu
2009-01 CLUSTER

Long time-scale simulations of in vivo diffusion using GPU hardware

Elijah Roberts, John E. Stone, Leonardo Sepulveda, Wen-mei W. Hwu, Zaida Luthey-Schulten
2009-01 IPDPS

Immersive Molecular Visualization with Omnidirectional Stereoscopic Ray Tracing and Remote Rendering

John E. Stone, William R. Sherman, Klaus Schulten
2016-01 IPDPS Workshops

Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads

John E. Stone, Michael J. Hallock, James C. Phillips, Joseph R. Peterson, Zaida Luthey-Schulten, Klaus Schulten
2016-01 IPDPS Workshops

High Performance Molecular Visualization: In-Situ and Parallel Rendering with EGL

John E. Stone, Peter Messmer, Robert Sisneros, Klaus Schulten
2016-01 IPDPS Workshops

Immersive Molecular Visualization and Interactive Modeling with Commodity Hardware

John E. Stone, Axel Kohlmeyer, Kirby L. Vandivort, Klaus Schulten
2010-01 ISVC (2)

Immersive Out-of-Core Visualization of Large-Size and Long-Timescale Molecular Dynamics Trajectories

John E. Stone, Kirby L. Vandivort, Klaus Schulten
2011-01 ISVC (2)

An asymmetric distributed shared memory model for heterogeneous parallel systems

Isaac Gelado, Javier Cabezas, Nacho Navarro, John E. Stone, Sanjay J. Patel, Wen-mei W. Hwu
2010-01 ASPLOS

High performance computation and interactive display of molecular orbitals on GPUs and multi-core CPUs

John E. Stone, Jan Saam, David J. Hardy, Kirby L. Vandivort, Wen-mei W. Hwu, Klaus Schulten
2009-01 GPGPU

Adapting a message-driven parallel application to GPU-accelerated clusters

James C. Phillips, John E. Stone, Klaus Schulten
2008-01 SC

Lessons Learned from Responsive Molecular Dynamics Studies of the COVID-19 Virus

David J. Hardy, John E. Stone, Barry Isralewitz, Emad Tajkhorshid
2021-01 UrgentHPC@SC

GPU-accelerated molecular visualization on petascale supercomputing platforms

John E. Stone, Kirby L. Vandivort, Klaus Schulten
2013-01 UltraVis@SC

Petascale Tcl with NAMD, VMD, and Swift/T

James C. Phillips, John E. Stone, Kirby L. Vandivort, Timothy G. Armstrong, Justin M. Wozniak, Michael Wilde
+1 more show fewer
Klaus Schulten
2014-01 HPTCDL@SC

Quantifying the impact of GPUs on performance and energy efficiency in HPC clusters

Jeremy Enos, Craig P. Steffen, Joshi Fullop, Michael T. Showerman, Guochun Shi, Kenneth Esler
+3 more show fewer
Volodymyr V. Kindratenko, John E. Stone, James C. Phillips
2010-01 Green Computing Conference

A system for interactive molecular dynamics simulation

John E. Stone, Justin Gullingsrud, Klaus Schulten
2001-01 SI3D

Communicating science through visualization in an age of alternative facts

Kalina Borkiewicz, A. J. Christensen, John E. Stone
2017-01 SIGGRAPH Courses

ANARI: ANAlytic Rendering Interface

Kevin S. Griffin, Jefferson Amstutz, David E. DeMarle, Johannes Günther, Jakob Progsch, William R. Sherman
+3 more show fewer
John E. Stone, Will Usher, Kees van Kooten
2022-01 EuroVis (Posters)

Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories

Michael Krone, John E. Stone, Thomas Ertl, Klaus Schulten
2012-01 EuroVis (Short Papers)