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Luiz Gadelha

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7 papers 114 citations h-index 3 2022–2025

Applying the FAIR Principles to computational workflows

Sean R. Wilkinson, Meznah Aloqalaa, Khalid Belhajjame, Michael R. Crusoe, Bruno de Paula Kinoshita, Luiz Gadelha
+17 more show fewer
Daniel Garijo, Ove Johan Ragnar Gustafsson, Nick Juty, Sehrish Kanwal, Farah Zaib Khan, Johannes Koster, Karsten Peters-von Gehlen, Line Pouchard, Randy K. Rannow, Stian Soiland-Reyes, Nicola Soranzo, Shoaib Sufi, Ziheng Sun, Baiba Vilne, Merridee A. Wouters, Denis Yuen, Carole Goble

Recent trends within computational and data sciences show an increasing recognition and adoption of computational workflows as tools for productivity and reproducibility that also democratize...

77 citations 2024-10

Workflows Community Summit 2022: A Roadmap Revolution

Rafael Ferreira da Silva, Rosa M. Badia, Venkat Bala, Debbie Bard, Peer-Timo Bremer, Ian Buckley
+99 more show fewer
Silvina Caino-Lores, Kyle Chard, Carole Goble, Shantenu Jha, Daniel S. Katz, Daniel Laney, Manish Parashar, Frederic Suter, Nick Tyler, Thomas Uram, Ilkay Altintas, Stefan Andersson, William Arndt, Juan Aznar, Jonathan Bader, Bartosz Balis, Chris Blanton, Kelly Rosa Braghetto, Aharon Brodutch, Paul Brunk, Henri Casanova, Alba Cervera Lierta, Justin Chigu, Taina Coleman, Nick Collier, Iacopo Colonnelli, Frederik Coppens, Michael Crusoe, Will Cunningham, Bruno de Paula Kinoshita, Paolo Di Tommaso, Charles Doutriaux, Matthew Downton, Wael Elwasif, Bjoern Enders, Chris Erdmann, Thomas Fahringer, Ludmilla Figueiredo, Rosa Filgueira, Martin Foltin, Anne Fouilloux, Luiz Gadelha, Andy Gallo, Artur Garcia Saez, Daniel Garijo, Roman Gerlach, Ryan Grant, Samuel Grayson, Patricia Grubel, Johan Gustafsson, Valerie Hayot-Sasson, Oscar Hernandez, Marcus Hilbrich, AnnMary Justine, Ian Laflotte, Fabian Lehmann, Andre Luckow, Jakob Luettgau, Ketan Maheshwari, Motohiko Matsuda, Doriana Medic, Pete Mendygral, Marek Michalewicz, Jorji Nonaka, Maciej Pawlik, Loic Pottier, Line Pouchard, Mathias Putz, Santosh Kumar Radha, Lavanya Ramakrishnan, Sashko Ristov, Paul Romano, Daniel Rosendo, Martin Ruefenacht, Katarzyna Rycerz, Nishant Saurabh, Volodymyr Savchenko, Martin Schulz, Christine Simpson, Raul Sirvent, Tyler Skluzacek, Stian Soiland-Reyes, Renan Souza, Sreenivas Rangan Sukumar, Ziheng Sun, Alan Sussman, Douglas Thain, Mikhail Titov, Benjamin Tovar, Aalap Tripathy, Matteo Turilli, Bartosz Tuznik, Hubertus van Dam, Aurelio Vivas, Logan Ward, Patrick Widener, Sean Wilkinson, Justyna Zawalska, Mahnoor Zulfiqar

Scientific workflows have become integral tools in broad scientific computing use cases. Science discovery is increasingly dependent on workflows to orchestrate large and complex scientific...

34 citations 2023-03 arXiv.org

Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities

Luiz Gadelha, Martin Hohmuth, Mahnoor Zulfiqar, David Schone, Sheeba Samuel, Maria Sorokina
+2 more show fewer
Christoph Steinbeck, Birgitta Konig-Ries

The increasing volumes of data produced by high-throughput instruments coupled with advanced computational infrastructures for scientific computing have enabled what is often called a {\em Fourth...

3 citations 2022-07 e-Science

Toward a Provenance-Aware Observability Framework for Human Genomics Computational Workflows

Luiz Gadelha, Florian Heyl, Karoline Mauer, Kübra Narci, Zehra Hazal Sezer, Andrew Behrens
+2 more show fewer
Anandhi Iyappan, Koray Kirli
2025-01 Provenance Week@SIGMOD

An Ecosystem of Services for FAIR Computational Workflows

Sean R. Wilkinson, Johan Gustafsson, Finn Bacall, Khalid Belhajjame, Salvador Capella, Jose Maria Fernandez Gonzalez
+19 more show fewer
Jacob Fosso Tande, Luiz Gadelha, Daniel Garijo, Patricia Grubel, Bjorn Gruning, Farah Zaib Khan, Sehrish Kanwal, Simone Leo, Stuart Owen, Luca Pireddu, Line Pouchard, Laura Rodriguez-Navas, Beatriz Serrano-Solano, Stian Soiland-Reyes, Baiba Vilne, Alan Williams, Merridee Ann Wouters, Frederik Coppens, Carole Goble

Computational workflows represent major investments of effort and expertise. As first-class, publishable research objects of their own, they are key to sharing methodological know-how for reuse,...

2025-05

Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows

Rafael Ferreira da Silva, Deborah Bard, Kyle Chard, Shaun de Witt, Ian T. Foster, Tom Gibbs
+105 more show fewer
Carole Goble, William Godoy, Johan Gustafsson, Utz-Uwe Haus, Stephen Hudson, Shantenu Jha, Laila Los, Drew Paine, Frederic Suter, Logan Ward, Sean Wilkinson, Marcos Amaris, Yadu Babuji, Jonathan Bader, Riccardo Balin, Daniel Balouek, Sarah Beecroft, Khalid Belhajjame, Rajat Bhattarai, Wes Brewer, Paul Brunk, Silvina Caino-Lores, Henri Casanova, Daniela Cassol, Jared Coleman, Taina Coleman, Iacopo Colonnelli, Anderson Andrei Da Silva, Daniel de Oliveira, Pascal Elahi, Nour Elfaramawy, Wael Elwasif, Brian Etz, Thomas Fahringer, Wesley Ferreira, Rosa Filgueira, Jacob Fosso Tande, Luiz Gadelha, Andy Gallo, Daniel Garijo, Yiannis Georgiou, Philipp Gritsch, Patricia Grubel, Amal Gueroudji, Quentin Guilloteau, Carlo Hamalainen, Rolando Hong Enriquez, Lauren Huet, Kevin Hunter Kesling, Paula Iborra, Shiva Jahangiri, Jan Janssen, Joe Jordan, Sehrish Kanwal, Liliane Kunstmann, Fabian Lehmann, Ulf Leser, Chen Li, Peini Liu, Jakob Luettgau, Richard Lupat, Jose M. Fernandez, Ketan Maheshwari, Tanu Malik, Jack Marquez, Motohiko Matsuda, Doriana Medic, Somayeh Mohammadi, Alberto Mulone, John-Luke Navarro, Kin Wai Ng, Klaus Noelp, Bruno P. Kinoshita, Ryan Prout, Michael R. Crusoe, Sashko Ristov, Stefan Robila, Daniel Rosendo, Billy Rowell, Jedrzej Rybicki, Hector Sanchez, Nishant Saurabh, Sumit Kumar Saurav, Tom Scogland, Dinindu Senanayake, Woong Shin, Raul Sirvent, Tyler Skluzacek, Barry Sly-Delgado, Stian Soiland-Reyes, Abel Souza, Renan Souza, Domenico Talia, Nathan Tallent, Lauritz Thamsen, Mikhail Titov, Benjamin Tovar, Karan Vahi, Eric Vardar-Irrgang, Edite Vartina, Yuandou Wang, Merridee Wouters, Qi Yu, Ziad Al Bkhetan, Mahnoor Zulfiqar

The Workflows Community Summit gathered 111 participants from 18 countries to discuss emerging trends and challenges in scientific workflows, focusing on six key areas: time-sensitive workflows,...

2024-10

Evaluating the method reproducibility of deep learning models in the biodiversity domain

Waqas Ahmed, Vamsi Krishna Kommineni, Birgitta Konig-Ries, Jitendra Gaikwad, Luiz Gadelha, Sheeba Samuel

Artificial Intelligence (AI) is revolutionizing biodiversity research by enabling advanced data analysis, species identification, and habitats monitoring, thereby enhancing conservation efforts....

2024-07