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Rob Egan

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9 papers 60 citations h-index 2 2013–2023

The Parallelism Motifs of Genomic Data Analysis

Katherine Yelick, Aydin Buluc, Muaaz Awan, Ariful Azad, Benjamin Brock, Rob Egan
+8 more show fewer
Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker

Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and share this data with...

20 citations 2020-01 Philosophical Transactions of the Royal Society A

Extreme Scale De Novo Metagenome Assembly

Evangelos Georganas, Rob Egan, Steven Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt
+3 more show fewer
Aydin Buluc, Leonid Oliker, Katherine Yelick

Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation of the underlying...

40 citations 2018-09 International Conference for High Performance Computing, Networking, Storage and Analysis

Designing Efficient SIMD Kernels for High Performance Sequence Alignment

Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven Hofmeyr, Leonid Oliker
+1 more show fewer
Katherine A. Yelick
2023-01 IPDPS Workshops

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems

Marquita Ellis, Evangelos Georganas, Rob Egan, Steven Hofmeyr, Aydin Buluç, Brandon Cook
+2 more show fewer
Leonid Oliker, Katherine A. Yelick
2017-01 Euro-Par

Automatic Outlier Detection for Genome Assembly Quality Assessment

Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang
2013-01 e-Science

MerBench: PGAS Benchmarks for High Performance Genome Assembly

Evangelos Georganas, Marquita Ellis, Rob Egan, Steven Hofmeyr, Aydin Buluç, Brandon Cook
+2 more show fewer
Leonid Oliker, Katherine A. Yelick
2017-01 PAW@SC

Extreme scale de novo metagenome assembly

Evangelos Georganas, Rob Egan, Steven Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt
+3 more show fewer
Aydin Buluç, Leonid Oliker, Katherine A. Yelick
2018-01 SC

Accelerating large scale

Muaaz Gul Awan, Steven Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe
+2 more show fewer
Leonid Oliker, Katherine A. Yelick
2021-01 SC

HipMer: an extreme-scale de novo genome assembler

Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven Hofmeyr, Chaitanya Aluru, Rob Egan
+3 more show fewer
Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
2015-01 SC